WebTopicNet: a framework for measuring transcriptional regulatory network change. Shaoke Lou, Tianxiao Li, Xiangmeng Kong, Jing Zhang, Jason Liu, Donghoon Lee, Mark Gerstein. Next generation sequencing data highlights comprehensive and dynamic changes in the human gene regulatory network. Moreover, changes in regulatory network connectivity ... WebLdavis ⭐ 430. R package for web-based interactive topic model visualization. dependent packages 1 total releases 2 most recent commit 5 years ago.
TopicNet: a framework for measuring transcriptional ... - bioRxiv
Web27. okt 2024 · TopicNet represents each topic as a Gaussian-distributed embedding vector, projects the topics of all layers into a shared embedding space, and explores both the … Web23. apr 2024 · The key difference between TopicNet and other popular topic modeling frameworks (e.g. GenSim) is that TopicNet mainly focuses on additively regularized topic models (ARTM). An important feature of ARTM formalism is the ability to combine multiple requirements in one topic model, resulting in very high customizability. ... bkw valais
Topic Modeling: TopicNet Python Library - YouTube
Web23. jan 2024 · In particular, we propose a method called TopicNet that applies latent Dirichlet allocation (LDA) to extract meaningful functional topics for a collection of genes regulated by a TF. We then define a rewiring score to quantify the large-scale changes in the regulatory network in terms of topic change for a TF. Using this framework, we can ... Web1. júl 2024 · Availability and implementation: The TopicNet framework and related analysis were implemented using R and all codes are available at … WebThis paper introduces TopicNet, a new Python module for topic modeling. This package, distributed under the MIT license, focuses on bringing additive regularization topic … bk sylvia